E340/542 Network Modeling, Lecture 3 Chemical Reactions [Pedro dal Castel] September 10, 2024

Описание: ENG340/542 Biological Network Modeling Lecture 3, Introduction to Networks, Network Modeling in Tellurium and Antimony, Chemical Reactions
September 10, 2024
Presented by Pedro dal Castel
Indiana University, Department of Intelligent Systems Engineering and Biocomplexity Institute
Bloomington, IN 47408, USA

Engineering 340/542 teaches how to model network dynamics using the Tellurium/Antimony model specification framework and Python-based Jupyter notebooks. The course covers the basics of developing simple metabolic, cell-signaling, gene-regulatory and pharmaco-kinetic network models and fitting models to experimental data. The lecture introduces

Contents
00:00 - Introduction

Slides available at: https://drive.google.com/drive/folder...
Exercises available at: https://drive.google.com/drive/folder...
Demos available at: https://drive.google.com/drive/folder...

For an on-line introduction to the Antimony/Tellurium modeling framework, please see:
https://tellurium.readthedocs.io/en/l...
To download Tellurium visit: https://tellurium.analogmachine.org/

If you found this video useful, please check out our other videos teaching computational modeling:
For dynamic network modeling:    • E340/542 Introduction to Network Modeling ...  
For multicellular agent-based modeling:    • E443/543 Multicell Modeling Spring 2023