RNA-seq: import raw FASTQ files
Автор: MiLaboratories
Загружено: 2025-11-05
Просмотров: 28
Описание:
This video guide demonstrates how to set up your analysis project on Platforma by importing and organizing your raw sequencing data. We walk you through importing FASTQ files from a remote server, parsing complex filenames to extract sample, lane, and read information, and finally, linking your data to a metadata file.
In this video, you will learn how to:
Import raw FASTQ files from a remote server directly into your project.
Use Platforma's powerful pattern-matching system to automatically parse and group files by sample name, lane, and read (R1/R2).
Customize the import pattern to handle complex filenames, such as skipping or renaming specific parts.
Correctly group data from multiple sequencing lanes (e.g., L001, L002) for each sample.
Import a metadata file (CSV/TSV) and map it to your samples.
Prepare your dataset for downstream analysis blocks, such as Cell Ranger.
Platforma is a no-code, end-to-end bioinformatics platform designed to empower biologists and immunologists to get from raw data to publication-ready discoveries without coding expertise.
➡️ Explore Platforma: https://platforma.bio
➡️ Read our Documentation: https://docs.platforma.bio/guides/rna...
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