Bioinformatics with Biopython - Full Course | 1 hour Python for Bioinformatics tutorial

Описание: In this video I combined all Biopython/Python for Bioinformatics tutorials to make full Biopython course with Bioinformatics examples. We will cover some of Biopython functionalities, from SeqIO module where we are going to learn how to parse FASTA/FASTQ files, to working with Seq objects and using transcribe and translate methods to transform from DNA to RNA to protein. These are just few of examples in this 1 hour long Biopython course.

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Here is the list of examples/topics I cover and feel free to skip to chapter of interest to you:
0:0:10 What is Biopython?
0:00:42 SeqIO module: reading and parsing sequence files (FASTA/FASTQ)
0:03:28 Calculating GC content of sequence which is read with Biopython SeqIO module from FASTA file
0:06:17 Biopython Seq object with example of central dogma - translation and transcription
0:09:38 Checking quality of reads - reading/parsing FASTQ file
0:14:52 NCBI databases: Accessing via Biopython Entrez
0:21:12 Pairwise sequence alignment with pairwise2 module
0:31:07 Using BLAST with Biopython to align sequences
0:34:31 COVID-19 genome analysis
0:44:48 Motif objects creation in Biopython
0:49:25 Plotting sequences information: length & GC content
0:52:10 Faster reads of big sequence files with index functionality
0:58:07 Filtering sequence files

All notebooks can be found: https://github.com/lanadominkovic/12-...

My channel is aimed at everyone interested in Data Science and Machine Learning with Python. The mission is to simplify Python concepts, one video at a time! Stay productive!

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