Essential ATSAS tools that you need for SAXS/SANS data analysis and modelling

Описание: A quick overview of the small-angle scattering data analysis program suite ATSAS - by Al Kikhney
Download academic ATSAS: https://www.embl-hamburg.de/biosaxs/d...
Commercial licenses: http://biosaxs.com/software.html
00:00 An overview of ATSAS - the most comprehensive software package for biological small-angle scattering data analysis
00:33 Primary data analysis
01:37 AMBIMETER - ambiguity assessment
02:06 PRIMUS - GUI for processing and primary analysis of experimental data
04:12 Guinier/radius of gyration
04:40 Protein molecular weight
05:52 GNOM - pair distance distribution function p(r)
07:11 DATtools https://www.embl-hamburg.de/biosaxs/d...
07:36 Ab initio modelling:
07:49 DAMMIF,
08:14 DAMMIN,
08:24 GASBOR,
08:51 MONSA.
09:51 Monodisperse systems
10:04 CRYSOL - computing SAXS from atomic models and fitting to experimental data
10:21 CRYSON - computing and fitting SANS from atomic models
10:50 SREFLEX - flexible refinement using NMA
11:40 NMATOR - flexible refinement using NMA in dihedral/torsion angle space
11:59 SASREF - rigid body modelling of multisubunit complexes
12:59 CORAL - modelling of multidomain protein complexes with missing linkers
14:06 Re-running modelling multiple times
14:42 Polydisperse systems
14:56 CHROMIXS - visualizing and processing SEC-SAXS data
16:23 OLIGOMER - fitting a linear combination of models (as a mixture)
17:12 SASREFMX - rigid body modelling of equilibrium mixtures
17:48 GASBORMX - ab initio modelling of protein oligomer:monomer mixtures
18:23 EOM - ensemble optimization method
19:42 RANCH & GAJOE - EOM with custom pools of models
21:50 SASpy - PyMOL plugin