DevoWorm (2024, #20): Open-source Biophysics, NDPs and C. elegans, language models and gene function
Автор: DevoWorm
Загружено: 2024-06-10
Просмотров: 28
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Attendees: Pakhi Banchalia, Richard Gordon, Susan Crawford-Young, Jesse Parent, Morgan Hough, and Bradly Alicea
Overview of open-source Physics simulators Torax and MuJoCo. Milestones in Developmental Biology and historical antecedents of key concepts in the field. Update on using NDPs for application to C. elegans development. Using recent trends in language modeling to understand functional gene expression. Overview of the interactive C. elegans lineage tree and symmetric/asymmetric cell divisions in development.
Papers:
Kwon et.al (2024). On knowing a gene: A distributional hypothesis of gene function. Cell Systems 15, doi:10.1016/j.cels.2024.04.008.
Milestones in Development. Nature Portfolio, (2004). https://www.nature. com/collections/pmwvdkzjld
Bhatla, N. Interactive C. elegans Lineage Tree. http://www.wormweb.org/ celllineage#c=P0&z=1
Torax: differentiable physics simulator. https://github.com/google-deepmind/torax
MuJoCo: multijoint physics simulator. https://github.com/google-deepmind/mu...
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