Download FASTQ Files from NCBI SRA | RNA-Seq Data Retrieval Step-by-Step | Ep. 30

Описание: Welcome to Lecture 30 of the Bioinformatics Data Analysis using Linux, Python & R series!
In this video, we’ll show you how to download raw FASTQ reads for RNA-Seq analysis directly from the NCBI Sequence Read Archive (SRA) using the SRA Toolkit.

🔍 What You’ll Learn:
What is NCBI SRA and how it stores RNA-Seq data

How to search and select datasets using accession numbers

Installing and setting up the SRA Toolkit

Using prefetch and fasterq-dump to download reads

Folder structure and best practices for organizing FASTQ files

Troubleshooting common errors (proxy, download size, disk space)

This tutorial is ideal for beginners who want to practice RNA-Seq on public data from NCBI, GEO, or SRA.

📂 Code & commands from the video: https://bioinfocamp.co
📺 Watch the full playlist here: [Series Playlist Link]
💬 Got stuck using SRA Toolkit? Ask below or join our support group: [Discord/FB Group Link]

👍 Like | 💬 Comment your favorite SRA project | 🔔 Subscribe for full RNA-Seq analysis tutorials

#sra
#ncbi
#fastq
#rnaseq
#bioinformatics
#ngsdata
#linuxpythonr
#srakit
#computationalbiology
#transcriptomics