Machine Learning in Computational Biology

MLCB 2024: Introduction–Sara Mostafavi (Paul G. Allen School of Computer Science & Engineering)

MLCB 2024: Shiron Drusinsky (UC San Francisco) Fine-tuning on Personal Genomes Improves Expression..

MLCB 2024: Gokul Gowri (Harvard University) Approximating mutual information of high-dimensional...

MLCB 2024: Gang Li (UW Data Science) Predicting cell cycle stage from 3D single-cell nuclear-...

MLCB 2024: Han Yuan (Calico) Regulatory sequence analysis of RNA-seq via parameter-efficient...

MLCB 2024: Hao Zhu (Tufts University) RegDiffusion: Fast Gene Regulatory Networks using Diffusion...

MLCB 2024: Sergey Ovchinnikov (MIT) Decomposing protein and genomic language models to understand...

MLCB 2024: Rishabh Anand (National University of Singapore) RNA-FrameFlow: Flow Matching for...

MLCB 2024: Haowen Zhao (Imperial College London) Computational design of target-specific linear...

MLCB 2024: Akshat Singhal (UC San Diego) A deep learning model of tumor cell architecture elucidates

MLCB 2024: Spotlights 2

MLCB 2024: Maria Chikina (University of Pittsburgh) Towards biophysically interpretable sequence...

MLCB 2024: Panel - Foundation models for biology, when are they useful?

MLCB 2024: Thomas Pierrot (InstaDeep) The Nucleotide Transformer: building and evaluating robust...

MLCB 2024: Nilah Ioannidis (UC Berkeley) Personal genome interpretation with sequence-to-function...

MLCB 2024: Romain Lopez (Genentech) Cross-modality Matching and Prediction of Perturbation Responses

MLCB 2024: Jian Zhou (UT Southwestern) Sequence basis of transcription initiation in the human...

MLCB 2024: Spotlights 1

MLCB 2024: Philip Fradkin (Vector Institute) IsoCLR: Contrastive learning for RNA foundation models

MLCB 2024: Jishnu Das (University of Pittsburgh) Significant Latent Factor Interaction Discovery...

MLCB 2024: Ava Amini (MIT) Bridging biophysics & AI for generative protein design

MLCB 2024: Austin T Wang, Aman Patel, and Arpita Singhal (Stanford University) DART-Eval: A Compr...

MLCB 2024: Anirban Sarkar (Cold Spring Harbor Laboratory) Designing DNA with Tunable Regulatory...

MLCB 2024: Yunyi Shen (MIT) Multi-marginal Schrödinger Bridges with Iterative Reference Refinement

Chenwei Zhang - ViDa: Visualizing DNA hybridization trajectories with biophysics informed deep gr...

Rebecca Boiarsky - A Deeper Dive into Single Cell RNA Sequencing Foundation Models

MLCB2023 Panel - Bridging Academia and Industry

Elham Azizi - Probabilistic modeling of dynamics in the tumor microenvironment

Bianca Dumitrascu - Towards morphogenomics: finding statistical representations of development

Alexander Rives - Evolutionary Scale Language Models